参考文献/References:
[1] Deane C M,Salwiński ,Xenarios I,et al.Protein interactions:two methods for assessment of the reliability of high throughput observations [J].Molecular & Cellular Proteomics,2002,1(5):349-356.
[2] Srihari S,Ning K,Leong H W.Refining Markov clustering for protein complex prediction by incorporating core-attachment structure [J].Genome Informatics Series,2009,23(1):159-168.
[3] Brun C,Chevenet F,Martin D,et al.Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network [J].Genome biology,2004,5(1):6.
[4] Chua Honnian,Sung Wingkin,Wong Limsoon.Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions [J].Bioinformatics,2006,22(13):1623-1630.
[5] Liu Guimei,Wong Limsoon,Chua Honnian.Complex discovery from weighted PPI networks [J].Bioinformatics,2009,25(15):1891-1897.
[6] 唐楠,杨志豪,吴佳金,等.基于监督学习的蛋白质络合物抽取方法 [J].广西师范大学学报:自然科学版,2011,29(2):174-179.
[7] Wang Jian,Xie Dong,Lin Hongfei,et al.Identifying protein complexes from PPI networks using go semantic similarity[EB/OL].
[2012-10-13].http:∥ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6120506&tag=1.
[8] Xenarios I,Salwinski L,Duan X J,et al.DIP,the database of interacting proteins:a research tool for studying cellular networks of protein interactions [J].Nucleic acids research,2002,30(1):303-305.
[9] Harris M,Clark J,Ireland A,et al.The gene ontology(GO)database and informatics resource [J].Nucleic acids research,2004,32:D258-D261.
[10] Wu Min,Li Xiaoli,Kwoh C K,et al.A core-attachment based method to detect protein complexes in PPI networks [J].BMC bioinformatics,2009,10(1):169.
[11] Cossock D,Zhang Tong.Subset ranking using regression [EB/OL].
[2012-10-16].http:∥link.springer.com/chapter/10.1007%2F11776420_44#page-1.
[12] Tomita E,Tanaka A,Takahashi H.The worst-case time complexity for generating all maximal cliques and computational experiments [J].Theoretical Computer Science,2006,363(1):28-42.
[13] Brohee S,Van Helden J.Evaluation of clustering algorithms for protein-protein interaction networks [J].BMC bioinformatics,2006,7(1):488.
[14] Krogan N J,Cagney G,Yu H,et al.Global landscape of protein complexes in the yeast saccharomyces cerevisiae [J].Nature,2006,440:637-643.
[15] Gavin A C,Aloy P,Grandi P,et al.Proteome survey reveals modularity of the yeast cell machinery [J].Nature,2006,440:631-636.
[16] Bader G,Hogue C.An automated method for finding molecular complexes in large protein interaction networks [J].BMC bioinformatics,2003,4(1):2.
[17] 何文译,林鸿飞,杨亮.基于群体智慧的电影排序模型 [J].江西师范大学学报:自然科学版,2013,37(2):136-141.
[18] 任巨伟,杨亮,林鸿飞.情感图式构造及其在文体情感计算中的应用 [J].江西师范大学学报:自然科学版,2013,37(2):130-135.